Variant report

Variant	rs6937024
Chromosome Location	chr6:78082378-78082379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12525955	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2027534	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2320296	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60468223	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6453969	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6900768	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6903883	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6915854	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6922285	0.82[EUR][1000 genomes]
rs6924517	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7747900	0.82[EUR][1000 genomes]
rs7757657	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7772175	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9294071	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9443400	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9443403	0.99[AFR][1000 genomes]
rs9443412	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9443413	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9448048	0.80[EUR][1000 genomes]
rs9448054	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9448056	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9448062	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9448070	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9448072	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9448074	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028259	chr6:78059491-78709871	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv538325	chr6:78059491-78709871	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78079000-78083400	Weak transcription	Gastric	stomach
2	chr6:78082200-78083600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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