Variant report

Variant	rs6937108
Chromosome Location	chr6:145008153-145008154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56388113	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58413349	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6899827	1.00[AMR][1000 genomes]
rs6904051	1.00[AMR][1000 genomes]
rs6926495	1.00[AMR][1000 genomes]
rs73778379	1.00[AMR][1000 genomes]
rs73778380	1.00[AMR][1000 genomes]
rs73781916	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781917	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743704	1.00[AMR][1000 genomes]
rs7750421	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
2	chr6:144982800-145010000	Weak transcription	Fetal Stomach	stomach
3	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
4	chr6:144996000-145010000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:144996600-145018400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:144996600-145052400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:144996800-145009800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:144997000-145008600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:144997000-145009400	Weak transcription	HMEC	breast
10	chr6:144997000-145010000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:144997000-145010000	Weak transcription	Fetal Intestine Small	intestine
12	chr6:144997000-145010000	Weak transcription	Spleen	Spleen
13	chr6:144997000-145010200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:144997000-145010200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:144997000-145010600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:144997000-145010600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:144997000-145011000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:144997000-145011400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:144997000-145011800	Weak transcription	Colonic Mucosa	Colon
20	chr6:144997000-145017600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:144997200-145018000	Weak transcription	NHLF	lung
22	chr6:144999400-145013200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:144999400-145025400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:144999800-145010200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:145000600-145008200	Weak transcription	Liver	Liver
26	chr6:145000800-145025400	Weak transcription	HSMM	muscle
27	chr6:145002400-145010800	Weak transcription	Right Atrium	heart
28	chr6:145002400-145013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:145002800-145009800	Weak transcription	Aorta	Aorta
30	chr6:145002800-145018000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:145004000-145008200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr6:145004400-145047000	Weak transcription	HSMMtube	muscle
33	chr6:145004600-145010000	Weak transcription	Ovary	ovary
34	chr6:145004600-145010200	Weak transcription	Gastric	stomach
35	chr6:145004600-145010400	Weak transcription	Lung	lung
36	chr6:145004600-145010400	Weak transcription	Thymus	Thymus
37	chr6:145004600-145010600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:145005000-145009800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr6:145005000-145010000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:145005000-145010000	Weak transcription	Pancreas	Pancrea
41	chr6:145005000-145010200	Weak transcription	Left Ventricle	heart
42	chr6:145005000-145010400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr6:145005000-145017800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:145005000-145031000	Weak transcription	HUVEC	blood vessel
45	chr6:145005200-145008600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:145005200-145008800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr6:145005200-145010600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:145005200-145010600	Weak transcription	Fetal Thymus	thymus
49	chr6:145005800-145009200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr6:145005800-145010200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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