Variant report

Variant	rs6937221
Chromosome Location	chr6:23560415-23560416
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6917476	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9466812	0.84[AMR][1000 genomes]
rs9466834	0.83[EUR][1000 genomes]
rs9466851	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422291	chr6:23466080-23600459	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv830608	chr6:23558655-23644405	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23559200-23560800	Enhancers	Fetal Intestine Large	intestine
2	chr6:23559800-23560600	Enhancers	Duodenum Mucosa	Duodenum
3	chr6:23559800-23560600	Enhancers	HepG2	liver
4	chr6:23559800-23560800	Enhancers	Colonic Mucosa	Colon
5	chr6:23559800-23560800	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr6:23560000-23560600	Enhancers	Pancreas	Pancrea
7	chr6:23560000-23560800	Enhancers	Adipose Nuclei	Adipose
8	chr6:23560000-23560800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr6:23560000-23561000	Flanking Active TSS	Liver	Liver
10	chr6:23560200-23560600	Enhancers	Gastric	stomach
11	chr6:23560200-23560800	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr6:23560400-23560800	ZNF genes & repeats	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links