Variant report

Variant	rs6937399
Chromosome Location	chr6:117785270-117785271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:117779599..117781620-chr6:117784627..117786769,2	K562	blood:
2	chr6:117784575..117787348-chr6:117789977..117792089,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCBLD1-1	chr6:117785219-117785328	NONHSAT114674

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17079228	0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60109428	1.00[ASN][1000 genomes]
rs73552913	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73554816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7745590	0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117783800-117785400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:117784800-117785400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:117784800-117786200	Enhancers	NHLF	lung
4	chr6:117784800-117786400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:117784800-117786400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:117785000-117786000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:117785000-117786000	Enhancers	Stomach Mucosa	stomach
8	chr6:117785000-117786600	Enhancers	HMEC	breast
9	chr6:117785200-117785400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:117785200-117785400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:117785200-117785400	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr6:117785200-117785400	Flanking Active TSS	A549	lung
13	chr6:117785200-117785400	Flanking Active TSS	HSMMtube	muscle
14	chr6:117785200-117785600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:117785200-117785600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:117785200-117785600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:117785200-117785600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:117785200-117785600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr6:117785200-117785600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:117785200-117785600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:117785200-117785600	Flanking Active TSS	HSMM	muscle
22	chr6:117785200-117785600	Flanking Active TSS	NH-A	brain
23	chr6:117785200-117785600	Flanking Active TSS	NHEK	skin
24	chr6:117785200-117785600	Flanking Active TSS	Osteobl	bone
25	chr6:117785200-117786000	Enhancers	Placenta Amnion	Placenta Amnion
26	chr6:117785200-117786000	Flanking Active TSS	HUVEC	blood vessel
27	chr6:117785200-117786200	Enhancers	NHDF-Ad	bronchial
28	chr6:117785200-117786400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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