Variant report

Variant	rs6937433
Chromosome Location	chr6:63073068-63073069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1041667	0.82[ASN][1000 genomes]
rs1317933	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16880659	0.82[ASN][1000 genomes]
rs16881826	0.82[ASN][1000 genomes]
rs16882220	0.82[ASN][1000 genomes]
rs16882668	0.82[ASN][1000 genomes]
rs16882700	0.82[ASN][1000 genomes]
rs16882802	0.82[ASN][1000 genomes]
rs16882808	0.82[ASN][1000 genomes]
rs35018276	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59606233	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62414735	0.82[ASN][1000 genomes]
rs62414736	0.82[ASN][1000 genomes]
rs62414740	0.82[ASN][1000 genomes]
rs62414741	0.82[ASN][1000 genomes]
rs62414745	0.82[ASN][1000 genomes]
rs62414746	0.82[ASN][1000 genomes]
rs62414747	0.82[ASN][1000 genomes]
rs62416846	0.82[ASN][1000 genomes]
rs62416847	0.82[ASN][1000 genomes]
rs62416848	0.82[ASN][1000 genomes]
rs62416859	0.82[ASN][1000 genomes]
rs62418175	0.82[ASN][1000 genomes]
rs62418203	0.82[ASN][1000 genomes]
rs62418213	0.82[ASN][1000 genomes]
rs62418216	0.82[ASN][1000 genomes]
rs62418218	0.82[ASN][1000 genomes]
rs6453554	0.82[ASN][1000 genomes]
rs6453555	0.82[ASN][1000 genomes]
rs6918824	0.82[ASN][1000 genomes]
rs6930175	0.82[ASN][1000 genomes]
rs6931088	0.82[ASN][1000 genomes]
rs73479276	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73479292	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73479294	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73479298	1.00[AMR][1000 genomes]
rs73484928	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7751345	0.82[ASN][1000 genomes]
rs7754074	0.82[ASN][1000 genomes]
rs7756645	0.82[ASN][1000 genomes]
rs876855	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017249	chr6:62906813-63317382	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020677	chr6:62911584-63309663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv532025	chr6:62944349-63571677	Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv916760	chr6:62944661-63290986	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029503	chr6:63033365-63698355	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv603350	chr6:63066240-63152724	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv462967	chr6:63069063-63173293	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv603351	chr6:63069063-63173293	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63066600-63081600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:63068400-63076400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:63068800-63076600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links