Variant report

Variant	rs6937819
Chromosome Location	chr6:53569785-53569786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4295480	0.87[ASN][1000 genomes]
rs6912139	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7773852	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs7774024	0.83[CEU][hapmap];0.91[CHB][hapmap];0.90[ASN][1000 genomes]
rs9474636	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6937819	FAM83B	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53560200-53575600	Weak transcription	Pancreas	Pancrea
2	chr6:53568000-53572800	Weak transcription	Fetal Brain Male	brain
3	chr6:53568400-53572600	Weak transcription	Fetal Heart	heart
4	chr6:53568800-53571200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:53569200-53571200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:53569200-53571400	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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