Variant report

Variant	rs6938119
Chromosome Location	chr6:13470415-13470416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13465251..13472690-chr6:13481619..13489131,10	K562	blood:
2	chr6:13469372..13471111-chr6:13483426..13485334,2	MCF-7	breast:
3	chr6:13463240..13466213-chr6:13468578..13470561,2	MCF-7	breast:
4	chr6:13468490..13471439-chr6:13483203..13485930,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL583828.1-1	chr6:13469502-13470862	NONHSAT107806

Variant related genes	Relation type
ENSG00000187461	Chromatin interaction
ENSG00000237786	Chromatin interaction
ENSG00000145990	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11964734	0.91[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv470802	chr6:13441424-13519371	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13452200-13483400	Weak transcription	Gastric	stomach
2	chr6:13454400-13485000	Weak transcription	Colonic Mucosa	Colon
3	chr6:13455200-13484400	Weak transcription	Small Intestine	intestine
4	chr6:13455200-13484600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:13455400-13481000	Weak transcription	HUVEC	blood vessel
6	chr6:13462800-13484800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:13463000-13470800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:13463200-13481000	Weak transcription	A549	lung
9	chr6:13463400-13476600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:13463600-13470600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:13463600-13473200	Weak transcription	HepG2	liver
12	chr6:13463600-13484400	Weak transcription	Primary T cells from cord blood	blood
13	chr6:13463800-13484600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:13464600-13476400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:13465200-13485000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:13466200-13470800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:13466400-13473400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:13466800-13474200	Weak transcription	Hela-S3	cervix
19	chr6:13467000-13478600	Weak transcription	Thymus	Thymus
20	chr6:13467200-13473800	Weak transcription	Primary B cells from cord blood	blood
21	chr6:13467600-13470600	Weak transcription	HSMMtube	muscle
22	chr6:13467800-13472800	Weak transcription	Fetal Thymus	thymus
23	chr6:13467800-13473400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:13467800-13474800	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:13468000-13471800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:13468000-13472000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:13468000-13473400	Weak transcription	Esophagus	oesophagus
28	chr6:13468200-13472000	Weak transcription	K562	blood
29	chr6:13468200-13474000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr6:13468200-13474600	Weak transcription	Liver	Liver
31	chr6:13468200-13477000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:13469000-13471800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:13469200-13470800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:13469200-13473600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:13469200-13480000	Weak transcription	Aorta	Aorta
36	chr6:13469400-13470600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:13469400-13485800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:13469800-13470800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:13469800-13471800	Strong transcription	NHEK	skin
40	chr6:13469800-13472200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:13470000-13470800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:13470000-13470800	Genic enhancers	NHLF	lung
43	chr6:13470000-13471600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:13470000-13471600	Enhancers	Fetal Heart	heart
45	chr6:13470000-13471800	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr6:13470000-13473200	Enhancers	NHDF-Ad	bronchial
47	chr6:13470000-13474200	Enhancers	Right Atrium	heart
48	chr6:13470200-13470600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
49	chr6:13470200-13470600	Strong transcription	HMEC	breast
50	chr6:13470200-13470800	Flanking Active TSS	Brain Angular Gyrus	brain

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