Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133049010..133050682-chr6:133062488..133064307,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2267952	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2300078	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3901670	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4895943	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4897614	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4897615	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6569832	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6569835	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6569841	0.80[EUR][1000 genomes]
rs6569842	0.80[EUR][1000 genomes]
rs6569844	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6899733	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6924414	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6925157	0.89[ASN][1000 genomes]
rs6927410	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6942306	0.80[EUR][1000 genomes]
rs7752016	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7770949	0.80[EUR][1000 genomes]
rs9321364	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9493426	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv965662	chr6:133058111-133063853	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv517934	chr6:133062916-133072650	Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6939079	VNN3	cis	Whole Blood	GTEx
rs6939079	VNN1	cis	Whole Blood	GTEx
rs6939079	VNN2	cis	Whole Blood	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133044400-133066200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:133055200-133064800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:133056800-133067400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:133057600-133069200	Weak transcription	GM12878-XiMat	blood
5	chr6:133058400-133064800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:133058400-133070400	Weak transcription	Liver	Liver
7	chr6:133058800-133067600	Weak transcription	Placenta	Placenta
8	chr6:133061400-133098000	Weak transcription	Spleen	Spleen
9	chr6:133061600-133072200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:133062600-133070400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:133062800-133065600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:133063000-133063600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:133063000-133063600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:133063000-133064600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:133063000-133065000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:133063200-133063600	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:133063200-133064200	Weak transcription	Primary B cells from cord blood	blood
18	chr6:133063200-133064800	Weak transcription	Primary B cells from peripheral blood	blood

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