Variant report

Variant	rs6939363
Chromosome Location	chr6:37612858-37612859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37601453..37608472-chr6:37609186..37615415,9	K562	blood:

Variant related genes	Relation type
ENSG00000112139	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10947689	0.86[ASN][1000 genomes]
rs12530135	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3905219	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs45511994	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs45539335	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4714088	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714089	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714090	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6901281	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462339	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462340	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9462341	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37594000-37615400	Weak transcription	Fetal Brain Female	brain
2	chr6:37599200-37615600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:37599200-37621800	Weak transcription	NHLF	lung
4	chr6:37602200-37616600	Weak transcription	Right Atrium	heart
5	chr6:37602800-37616400	Weak transcription	Ovary	ovary
6	chr6:37604200-37614600	Strong transcription	Fetal Stomach	stomach
7	chr6:37606800-37615600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:37611800-37616000	Weak transcription	Gastric	stomach
9	chr6:37612000-37613600	Weak transcription	Aorta	Aorta
10	chr6:37612000-37613800	Weak transcription	Lung	lung
11	chr6:37612200-37613600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:37612200-37613800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:37612200-37615600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:37612200-37616200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:37612200-37616200	Weak transcription	GM12878-XiMat	blood
16	chr6:37612400-37613600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:37612400-37615400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:37612400-37616200	Weak transcription	HMEC	breast
19	chr6:37612600-37613600	Weak transcription	Spleen	Spleen
20	chr6:37612600-37616000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:37612600-37616200	Weak transcription	Left Ventricle	heart
22	chr6:37612600-37619800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:37612800-37613200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:37612800-37613400	Weak transcription	K562	blood
25	chr6:37612800-37616000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links