Variant report

Variant	rs6939444
Chromosome Location	chr6:4808771-4808772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4804953..4807169-chr6:4808675..4810449,2	MCF-7	breast:
2	chr6:4799699..4801522-chr6:4807036..4809362,2	MCF-7	breast:
3	chr6:4804785..4806447-chr6:4808370..4810719,2	K562	blood:
4	chr6:4806891..4809234-chr6:4853712..4855967,2	K562	blood:
5	chr6:4799940..4802712-chr6:4806836..4810096,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11961156	1.00[ASN][1000 genomes]
rs11961513	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11962926	1.00[ASN][1000 genomes]
rs11967088	0.85[YRI][hapmap]
rs11967830	1.00[ASN][1000 genomes]
rs179822	1.00[ASN][1000 genomes]
rs2009326	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2063674	1.00[ASN][1000 genomes]
rs2063675	1.00[ASN][1000 genomes]
rs2063676	1.00[ASN][1000 genomes]
rs233478	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60624800	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6938682	1.00[ASN][1000 genomes]
rs73360686	1.00[ASN][1000 genomes]
rs73362505	1.00[ASN][1000 genomes]
rs7739005	1.00[ASN][1000 genomes]
rs7742941	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1015888	chr6:4787784-4883663	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4787400-4808800	Weak transcription	Aorta	Aorta
2	chr6:4794800-4818800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:4800000-4810400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:4801800-4811600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:4802200-4811200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:4802400-4810400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:4802400-4812000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:4802400-4818800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:4803400-4814600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:4803600-4810800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:4803800-4810400	Weak transcription	Small Intestine	intestine
12	chr6:4804000-4809200	Weak transcription	Fetal Stomach	stomach
13	chr6:4804600-4810200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:4804600-4810800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:4804600-4812000	Weak transcription	Pancreas	Pancrea
16	chr6:4804600-4812200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:4804600-4812200	Weak transcription	HSMMtube	muscle
18	chr6:4805000-4809200	Weak transcription	Primary B cells from cord blood	blood
19	chr6:4805000-4810200	Weak transcription	Osteobl	bone
20	chr6:4805200-4810200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:4805600-4809400	Enhancers	Placenta	Placenta
22	chr6:4806200-4808800	Enhancers	Ovary	ovary
23	chr6:4806400-4812000	Weak transcription	Esophagus	oesophagus
24	chr6:4806400-4812000	Weak transcription	Gastric	stomach
25	chr6:4806400-4812600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:4806600-4810200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:4806600-4810800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:4806600-4812200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:4806800-4808800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:4806800-4810400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:4806800-4814000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr6:4806800-4819800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:4806800-4820200	Weak transcription	NHLF	lung
34	chr6:4806800-4820400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr6:4806800-4829400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:4807000-4810200	Weak transcription	Hela-S3	cervix
37	chr6:4807000-4810200	Weak transcription	NH-A	brain
38	chr6:4807000-4812200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:4807000-4817400	Weak transcription	Brain Anterior Caudate	brain
40	chr6:4807000-4821200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:4807200-4808800	Weak transcription	A549	lung
42	chr6:4807200-4809000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:4807200-4809000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:4807200-4810200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr6:4807200-4810400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:4807200-4810400	Weak transcription	Fetal Heart	heart
47	chr6:4807200-4810400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr6:4807200-4810800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:4807200-4810800	Weak transcription	Spleen	Spleen
50	chr6:4807200-4819800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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