Variant report

Variant	rs6939489
Chromosome Location	chr6:161907419-161907420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161855223..161857273-chr6:161905432..161907491,2	MCF-7	breast:
2	chr6:161906066..161907970-chr6:161910670..161913449,2	K562	blood:
3	chr6:161874908..161877099-chr6:161907040..161908685,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12527036	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529813	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892626	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892642	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892722	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892736	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892737	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892738	0.85[EUR][1000 genomes]
rs16892817	1.00[ASN][1000 genomes]
rs17573347	1.00[ASN][1000 genomes]
rs17651866	1.00[ASN][1000 genomes]
rs2223769	1.00[ASN][1000 genomes]
rs4401638	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56854318	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58052550	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58571912	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59598263	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59880761	1.00[ASN][1000 genomes]
rs60259779	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60488028	1.00[ASN][1000 genomes]
rs60538195	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455733	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900002	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914398	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933655	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941476	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718319	1.00[ASN][1000 genomes]
rs73593420	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73593457	1.00[ASN][1000 genomes]
rs73593473	1.00[ASN][1000 genomes]
rs7758341	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764319	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764467	0.88[EUR][1000 genomes]
rs7766600	1.00[ASN][1000 genomes]
rs7767619	1.00[ASN][1000 genomes]
rs7769352	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769870	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769885	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770358	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9458246	1.00[ASN][1000 genomes]
rs960429	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960430	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1031234	chr6:161676768-162250726	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886819	chr6:161712035-162520133	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886820	chr6:161712880-162184932	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv830854	chr6:161739926-161927515	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv518931	chr6:161793319-162406335	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv481861	chr6:161802883-162160197	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv481981	chr6:161829077-162215745	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1033603	chr6:161844266-162001436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv481750	chr6:161850976-161996586	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv481932	chr6:161862158-162097499	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886822	chr6:161891388-161958898	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv886823	chr6:161891388-161971398	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv886824	chr6:161891388-161982988	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv886825	chr6:161891388-162184932	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161898200-161910800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:161901200-161908000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:161901200-161914600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:161902200-161908000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:161902200-161908000	Weak transcription	Right Atrium	heart
6	chr6:161902600-161915200	Weak transcription	Psoas Muscle	Psoas
7	chr6:161903800-161908000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:161904600-161907600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:161904600-161907800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:161904800-161907600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:161904800-161927800	Weak transcription	Fetal Kidney	kidney
12	chr6:161906000-161919400	Weak transcription	Pancreas	Pancrea
13	chr6:161907000-161908600	Enhancers	NHEK	skin
14	chr6:161907200-161907600	Active TSS	A549	lung
15	chr6:161907200-161907800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:161907200-161908000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:161907200-161908400	Enhancers	NH-A	brain
18	chr6:161907200-161909200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:161907200-161909600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:161907400-161908400	Enhancers	HSMM	muscle
21	chr6:161907400-161908600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:161907400-161908800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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