Variant report

Variant	rs693960
Chromosome Location	chr11:58941450-58941451
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58940155..58942428-chr11:58942468..58945192,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2845559	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv2758272	chr11:58700092-59008673	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2759830	chr11:58700092-59008673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs693960	DTX4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58938600-58942000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:58938800-58941800	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr11:58939000-58941600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:58939000-58941600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr11:58939000-58941600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:58939000-58941600	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr11:58939000-58941600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:58939000-58941600	Active TSS	Esophagus	oesophagus
9	chr11:58939000-58941600	Active TSS	Fetal Intestine Large	intestine
10	chr11:58939000-58941600	Active TSS	Fetal Kidney	kidney
11	chr11:58939000-58941600	Active TSS	Ovary	ovary
12	chr11:58939000-58941600	Active TSS	HSMM	muscle
13	chr11:58939000-58941600	Active TSS	HSMMtube	muscle
14	chr11:58939000-58941600	Active TSS	NHDF-Ad	bronchial
15	chr11:58939000-58941800	Active TSS	Colon Smooth Muscle	Colon
16	chr11:58939000-58942000	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr11:58939000-58942400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:58939000-58942600	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr11:58939200-58941600	Active TSS	Small Intestine	intestine
20	chr11:58939200-58941800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr11:58939200-58941800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:58939400-58941600	Active TSS	Sigmoid Colon	Sigmoid Colon
23	chr11:58939400-58942000	Active TSS	Duodenum Mucosa	Duodenum
24	chr11:58940000-58941600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:58940000-58941800	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr11:58940000-58942200	Flanking Active TSS	HMEC	breast
27	chr11:58940200-58941600	Active TSS	Stomach Mucosa	stomach
28	chr11:58940200-58941800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr11:58940200-58941800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
30	chr11:58940200-58942200	Flanking Active TSS	Placenta	Placenta
31	chr11:58940200-58942200	Flanking Active TSS	NHEK	skin
32	chr11:58940200-58942600	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr11:58940200-58943000	Flanking Active TSS	Liver	Liver
34	chr11:58940400-58941600	Active TSS	Pancreas	Pancrea
35	chr11:58940400-58941600	Active TSS	Right Atrium	heart
36	chr11:58940400-58942800	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr11:58940600-58941600	Active TSS	Fetal Brain Female	brain
38	chr11:58940600-58941800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
39	chr11:58940600-58942000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:58940600-58942000	Active TSS	Brain Angular Gyrus	brain
41	chr11:58940600-58943400	Active TSS	Rectal Smooth Muscle	rectum
42	chr11:58940800-58941600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
43	chr11:58940800-58941800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr11:58940800-58942000	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr11:58940800-58942000	Active TSS	iPS-20b Cell Line	embryonic stem cell
46	chr11:58941000-58941600	Active TSS	H1 Cell Line	embryonic stem cell
47	chr11:58941000-58941600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:58941000-58941600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:58941000-58941600	Bivalent Enhancer	Fetal Heart	heart
50	chr11:58941000-58941800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood

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