Variant report

Variant	rs6939773
Chromosome Location	chr6:4787611-4787612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4775121..4778028-chr6:4785210..4788103,4	MCF-7	breast:
2	chr6:4785155..4787889-chr6:4789535..4792390,3	MCF-7	breast:
3	chr6:4686580..4688742-chr6:4786418..4788333,2	K562	blood:
4	chr6:4778081..4781516-chr6:4787216..4791667,5	MCF-7	breast:
5	chr6:4786536..4789224-chr6:4899872..4901917,2	K562	blood:

Variant related genes	Relation type
ENSG00000153046	Chromatin interaction
ENSG00000236336	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17346907	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57931007	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60267416	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3429586	chr6:4719363-4792438	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4777800-4789000	Weak transcription	Pancreas	Pancrea
2	chr6:4778400-4789000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:4778400-4789600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:4778400-4790000	Weak transcription	Stomach Mucosa	stomach
5	chr6:4778600-4788800	Weak transcription	Adipose Nuclei	Adipose
6	chr6:4778600-4790000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:4781200-4788800	Weak transcription	HSMM	muscle
8	chr6:4781400-4794000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:4781400-4794400	Weak transcription	NHLF	lung
10	chr6:4781600-4797800	Weak transcription	Hela-S3	cervix
11	chr6:4781800-4788200	Weak transcription	Ovary	ovary
12	chr6:4781800-4790000	Weak transcription	Fetal Lung	lung
13	chr6:4781800-4794200	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:4782000-4790600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:4782000-4794400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:4782000-4797800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:4782400-4788200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:4782400-4788800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:4782400-4788800	Weak transcription	Placenta	Placenta
20	chr6:4782600-4788800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:4782600-4791400	Weak transcription	Fetal Heart	heart
22	chr6:4782800-4789200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:4782800-4789600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:4782800-4790600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:4783000-4788800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:4783000-4789600	Weak transcription	Small Intestine	intestine
27	chr6:4783000-4791400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:4783200-4788800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr6:4783200-4789000	Weak transcription	Primary B cells from cord blood	blood
30	chr6:4783200-4789000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:4783400-4789200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr6:4783400-4789600	Weak transcription	Colonic Mucosa	Colon
33	chr6:4784600-4789000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr6:4785000-4787800	Enhancers	Psoas Muscle	Psoas
35	chr6:4785200-4787800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr6:4785200-4790000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:4785400-4787800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:4785400-4789600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:4785400-4789600	Weak transcription	Fetal Intestine Small	intestine
40	chr6:4785400-4794400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:4785600-4787800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
42	chr6:4785600-4789000	Weak transcription	Esophagus	oesophagus
43	chr6:4785600-4789000	Weak transcription	Right Ventricle	heart
44	chr6:4785600-4789800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:4785600-4789800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:4785600-4789800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:4785600-4790000	Weak transcription	Fetal Stomach	stomach
48	chr6:4786000-4788200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:4786000-4788400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr6:4786000-4790000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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