Variant report

Variant	rs6940509
Chromosome Location	chr6:114387037-114387038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7776159	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114370200-114389600	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:114371400-114388200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:114379600-114390400	Weak transcription	HepG2	liver
4	chr6:114380800-114388000	Weak transcription	Psoas Muscle	Psoas
5	chr6:114383400-114390000	Weak transcription	Brain Germinal Matrix	brain
6	chr6:114384000-114389600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:114384200-114389400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:114384200-114389400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:114384200-114389600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:114384200-114389600	Weak transcription	Brain Substantia Nigra	brain
11	chr6:114384200-114390000	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:114384200-114398200	Weak transcription	Brain Angular Gyrus	brain
13	chr6:114385600-114387200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:114385600-114415800	Weak transcription	HSMM	muscle
15	chr6:114385800-114389600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:114386000-114388000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:114386200-114388200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:114386400-114387200	Enhancers	Brain Anterior Caudate	brain
19	chr6:114386400-114396600	Weak transcription	HSMMtube	muscle
20	chr6:114386600-114397800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:114387000-114387200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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