Variant report
| Variant | rs6941911 |
|---|---|
| Chromosome Location | chr6:82830438-82830439 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:82828130..82829652-chr6:82830378..82832932,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10485091 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12333288 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16893914 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28449783 | 0.81[EUR][1000 genomes] |
| rs4263626 | 1.00[ASN][1000 genomes] |
| rs4294052 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4443546 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs5017105 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56850863 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56970608 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57046652 | 1.00[ASN][1000 genomes] |
| rs61537617 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6924009 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72910640 | 1.00[ASN][1000 genomes] |
| rs7740829 | 1.00[ASN][1000 genomes] |
| rs9294245 | 1.00[ASN][1000 genomes] |
| rs9443957 | 0.81[EUR][1000 genomes] |
| rs9443958 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9443959 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9443962 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9443965 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9449424 | 0.81[EUR][1000 genomes] |
| rs9449426 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9449428 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9449429 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9449432 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9449433 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021464 | chr6:82738920-82876526 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | Chromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv830713 | chr6:82761201-82953570 | Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv830715 | chr6:82806657-82956327 | Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6941911 | KCNIP2 | trans | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:82827800-82847600 | Weak transcription | Left Ventricle | heart |
| 2 | chr6:82829000-82833000 | Weak transcription | HepG2 | liver |
