Variant report

Variant	rs6941986
Chromosome Location	chr6:15274969-15274970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15273950..15277864-chr6:15279657..15281867,3	MCF-7	breast:
2	chr6:15274783..15276442-chr6:15362069..15364888,2	K562	blood:
3	chr6:15274634..15276590-chr6:15288104..15290387,2	K562	blood:
4	chr6:15266698..15269191-chr6:15273161..15275404,3	K562	blood:
5	chr6:15272773..15275476-chr6:15276745..15279472,5	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1077080	0.82[AFR][1000 genomes]
rs13208655	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1322753	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1885673	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2327883	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6459404	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6921502	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766973	0.88[AFR][1000 genomes]
rs9464782	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15251200-15279400	Weak transcription	A549	lung
2	chr6:15261000-15283800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:15261200-15275000	Weak transcription	HMEC	breast
4	chr6:15265400-15279000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:15266000-15275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:15266200-15279200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:15267200-15279600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:15267400-15275000	Weak transcription	Osteobl	bone
9	chr6:15268000-15279800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:15269200-15275200	Weak transcription	HSMM	muscle
11	chr6:15269200-15290000	Weak transcription	NHLF	lung
12	chr6:15269400-15275200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:15269400-15276800	Weak transcription	NH-A	brain
14	chr6:15269600-15275000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:15269600-15275000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:15269600-15275000	Weak transcription	Right Ventricle	heart
17	chr6:15269600-15275200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:15269600-15275200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:15269600-15275800	Weak transcription	Fetal Brain Female	brain
20	chr6:15269600-15276800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:15269600-15276800	Weak transcription	Pancreas	Pancrea
22	chr6:15269800-15275000	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:15269800-15275200	Weak transcription	Fetal Intestine Small	intestine
24	chr6:15269800-15275200	Weak transcription	Left Ventricle	heart
25	chr6:15269800-15280000	Weak transcription	NHDF-Ad	bronchial
26	chr6:15270000-15275200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:15270000-15280800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:15270000-15281000	Weak transcription	Spleen	Spleen
29	chr6:15270000-15285400	Weak transcription	Thymus	Thymus
30	chr6:15270200-15275200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:15270200-15275200	Weak transcription	Fetal Heart	heart
32	chr6:15270200-15275200	Weak transcription	Fetal Kidney	kidney
33	chr6:15270200-15276000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:15270200-15277600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:15270200-15279600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr6:15270200-15279800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:15270200-15281600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:15270200-15288800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:15270400-15275000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:15270400-15275200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:15270400-15276000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:15270400-15276200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:15270400-15277000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:15270600-15276600	Weak transcription	Lung	lung
45	chr6:15271000-15275000	Weak transcription	Stomach Mucosa	stomach
46	chr6:15271000-15278800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr6:15271000-15278800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:15271000-15279000	Weak transcription	Fetal Intestine Large	intestine
49	chr6:15271000-15279200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:15271400-15275000	Weak transcription	HepG2	liver

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