Variant report

Variant	rs6942670
Chromosome Location	chr7:117449206-117449207
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56278833	0.91[AFR][1000 genomes]
rs57627307	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117396400-117450200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:117432200-117453000	Weak transcription	Aorta	Aorta
3	chr7:117432800-117451800	Weak transcription	Fetal Stomach	stomach
4	chr7:117437400-117456200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:117444400-117451600	Enhancers	Fetal Heart	heart
6	chr7:117445000-117450800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:117445600-117450200	Weak transcription	Pancreas	Pancrea
8	chr7:117446200-117451000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:117447400-117449800	Enhancers	Brain Substantia Nigra	brain
10	chr7:117447400-117450000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr7:117447600-117449600	Enhancers	Adipose Nuclei	Adipose
12	chr7:117447600-117450200	Enhancers	Fetal Brain Male	brain
13	chr7:117447600-117450800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:117447600-117453400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:117447800-117449600	Enhancers	Brain Germinal Matrix	brain
16	chr7:117447800-117450000	Enhancers	Fetal Lung	lung
17	chr7:117447800-117450200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:117447800-117450400	Enhancers	Duodenum Mucosa	Duodenum
19	chr7:117447800-117451200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:117448000-117449600	Enhancers	Brain Angular Gyrus	brain
21	chr7:117448000-117450400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr7:117448000-117450400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:117448000-117453400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr7:117448200-117449400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:117448200-117449600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:117448200-117449600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:117448400-117449600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr7:117448400-117450000	Enhancers	Brain Hippocampus Middle	brain
29	chr7:117448400-117451200	Enhancers	NHLF	lung
30	chr7:117448400-117451400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:117448400-117454200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr7:117448600-117449600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr7:117448600-117449800	Flanking Active TSS	NH-A	brain
34	chr7:117448600-117450000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:117448600-117450000	Weak transcription	Osteobl	bone
36	chr7:117448600-117450200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:117448600-117450400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr7:117448600-117450800	Weak transcription	Left Ventricle	heart
39	chr7:117448600-117451200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr7:117448600-117458400	Weak transcription	Esophagus	oesophagus
41	chr7:117448800-117449800	Enhancers	Fetal Intestine Small	intestine
42	chr7:117448800-117450200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:117448800-117452200	Weak transcription	Colon Smooth Muscle	Colon
44	chr7:117449000-117449400	Enhancers	Liver	Liver
45	chr7:117449000-117449800	Enhancers	NHDF-Ad	bronchial
46	chr7:117449000-117450000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr7:117449000-117450200	Weak transcription	Stomach Mucosa	stomach
48	chr7:117449000-117451400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr7:117449000-117467200	Weak transcription	Fetal Brain Female	brain
50	chr7:117449200-117449800	Genic enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links