Variant report

Variant	rs6943300
Chromosome Location	chr7:70921152-70921153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6961493	1.00[AFR][1000 genomes]
rs6961596	0.90[AFR][1000 genomes]
rs7779458	0.90[AFR][1000 genomes]
rs7783751	0.90[AFR][1000 genomes]
rs7800000	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70888200-70923000	Weak transcription	Ovary	ovary
2	chr7:70905000-70929000	Weak transcription	Right Atrium	heart
3	chr7:70908400-70922400	Weak transcription	Fetal Stomach	stomach
4	chr7:70908400-70935200	Weak transcription	Fetal Lung	lung
5	chr7:70908600-70921800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:70908600-70923000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:70909200-70922200	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:70912200-70922000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:70915800-70921600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:70916000-70926400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:70918400-70921600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:70918400-70921600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:70918400-70921600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:70918400-70921600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr7:70919000-70922000	Weak transcription	Fetal Heart	heart
16	chr7:70920000-70921200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:70920000-70922800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:70920000-70925200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr7:70920200-70925200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:70920400-70926000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:70920800-70921800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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