Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13321441..13322985-chr7:13782052..13783356,4	MCF-7	breast:
2	chr7:13321708..13322614-chr7:13781609..13782954,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARL4A-2	chr7:13782450-13783706	NONHSAT119255

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11761371	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11979631	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2158800	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2190319	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2190321	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2357673	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4141225	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4719380	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4721261	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4721262	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6949606	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs917225	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs917226	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs917227	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs917228	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830909	chr7:13692329-13868294	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv887695	chr7:13704951-13819968	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1034411	chr7:13743365-13826756	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13780400-13783800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr7:13780800-13783200	Enhancers	HSMM	muscle
3	chr7:13780800-13783600	Enhancers	Osteobl	bone
4	chr7:13781200-13783400	Enhancers	HSMMtube	muscle
5	chr7:13781400-13783000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:13781400-13783000	Enhancers	NH-A	brain
7	chr7:13781400-13783200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:13781400-13783200	Enhancers	Fetal Lung	lung
9	chr7:13781400-13783200	Enhancers	NHLF	lung
10	chr7:13781400-13783400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:13781400-13783400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:13781400-13783600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:13781400-13783800	Enhancers	Rectal Smooth Muscle	rectum
14	chr7:13781600-13783400	Enhancers	NHDF-Ad	bronchial
15	chr7:13781600-13784200	Enhancers	Fetal Brain Male	brain
16	chr7:13781800-13783400	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr7:13782000-13783200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:13782200-13783200	Enhancers	Colon Smooth Muscle	Colon
19	chr7:13782400-13782800	Weak transcription	Fetal Stomach	stomach
20	chr7:13782600-13784800	Weak transcription	Fetal Heart	heart

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