Variant report

Variant	rs6945310
Chromosome Location	chr7:26547243-26547244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12669192	0.85[CEU][hapmap]
rs17153818	1.00[JPT][hapmap]
rs17153845	1.00[JPT][hapmap]
rs17153862	1.00[JPT][hapmap]
rs17154295	1.00[JPT][hapmap]
rs6461950	1.00[ASN][1000 genomes]
rs73063756	1.00[ASN][1000 genomes]
rs730956	1.00[JPT][hapmap]
rs740181	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26545000-26548400	Enhancers	Fetal Brain Male	brain
2	chr7:26545200-26548600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:26546000-26548600	Enhancers	Fetal Brain Female	brain
4	chr7:26546400-26547400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:26546600-26548200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:26546800-26547400	Enhancers	Fetal Lung	lung
7	chr7:26546800-26547600	Enhancers	Pancreas	Pancrea
8	chr7:26546800-26548000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:26547200-26548400	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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