Variant report

Variant	rs6946160
Chromosome Location	chr7:96749484-96749485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:96748725..96750557-chr7:96827125..96829431,2	K562	blood:
2	chr7:96747720..96750174-chr7:96767579..96769561,2	K562	blood:
3	chr7:96743420..96745010-chr7:96747883..96750153,2	K562	blood:
4	chr7:96748869..96751979-chr7:96758718..96762589,5	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10269566	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10499934	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972827	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984368	0.81[EUR][1000 genomes]
rs1343646	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17168169	0.83[EUR][1000 genomes]
rs28458266	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2894101	0.83[EUR][1000 genomes]
rs55844717	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56074841	0.81[EUR][1000 genomes]
rs56130919	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62497458	0.85[EUR][1000 genomes]
rs62499469	0.81[EUR][1000 genomes]
rs62499470	0.82[EUR][1000 genomes]
rs62499471	0.81[EUR][1000 genomes]
rs6465569	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73233818	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73233831	0.81[EUR][1000 genomes]
rs7811543	0.81[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96746800-96749800	Active TSS	GM12878-XiMat	blood
2	chr7:96746800-96751800	Active TSS	K562	blood
3	chr7:96747400-96759800	Weak transcription	Spleen	Spleen
4	chr7:96747600-96753000	Weak transcription	Small Intestine	intestine
5	chr7:96747600-96759000	Weak transcription	Esophagus	oesophagus
6	chr7:96747600-96768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:96747800-96768200	Weak transcription	Aorta	Aorta
8	chr7:96748000-96749600	Enhancers	Fetal Heart	heart
9	chr7:96748000-96759000	Weak transcription	Left Ventricle	heart
10	chr7:96748200-96749600	Enhancers	Fetal Lung	lung
11	chr7:96748200-96759800	Weak transcription	Fetal Intestine Small	intestine
12	chr7:96748400-96749600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr7:96748400-96750600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr7:96748400-96767200	Weak transcription	Fetal Stomach	stomach
15	chr7:96748400-96768200	Weak transcription	Right Ventricle	heart
16	chr7:96748400-96768400	Weak transcription	Psoas Muscle	Psoas
17	chr7:96748600-96755800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:96748600-96756000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr7:96748600-96759200	Weak transcription	HMEC	breast
20	chr7:96749000-96749600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:96749000-96749800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:96749000-96750200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:96749000-96750200	Enhancers	HepG2	liver
24	chr7:96749000-96755400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr7:96749000-96768200	Weak transcription	Right Atrium	heart
26	chr7:96749200-96750400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr7:96749200-96750600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:96749200-96752000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr7:96749200-96752800	Weak transcription	Fetal Kidney	kidney
30	chr7:96749200-96755800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:96749200-96759800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:96749200-96768000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:96749400-96750200	Enhancers	Dnd41	blood
34	chr7:96749400-96750400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr7:96749400-96751800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr7:96749400-96755600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr7:96749400-96768000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr7:96749400-96768200	Weak transcription	Primary T cells from cord blood	blood

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