Variant report

Variant	rs6947299
Chromosome Location	chr7:21186541-21186542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1013309	1.00[AMR][1000 genomes]
rs1981702	0.86[AFR][1000 genomes]
rs1990464	1.00[AMR][1000 genomes]
rs2110007	0.88[AFR][1000 genomes]
rs2215681	1.00[AMR][1000 genomes]
rs2215682	1.00[AMR][1000 genomes]
rs3944038	1.00[AMR][1000 genomes]
rs4602790	0.82[AFR][1000 genomes]
rs4721970	1.00[AMR][1000 genomes]
rs4721971	1.00[AMR][1000 genomes]
rs4721973	1.00[AMR][1000 genomes]
rs4721985	1.00[AMR][1000 genomes]
rs6971050	1.00[AMR][1000 genomes]
rs6974131	1.00[AMR][1000 genomes]
rs759016	1.00[AMR][1000 genomes]
rs759017	1.00[AMR][1000 genomes]
rs917809	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830920	chr7:21014535-21201580	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3478244	chr7:21044211-21417347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3478245	chr7:21044211-21417347	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1020852	chr7:21060791-21375050	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv538799	chr7:21060791-21375050	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21185600-21186800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:21186000-21187000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:21186200-21186600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:21186200-21186600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr7:21186200-21186800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:21186200-21187000	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr7:21186200-21187000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr7:21186200-21187000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:21186200-21187000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:21186200-21187000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:21186400-21186600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:21186400-21186600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:21186400-21186600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:21186400-21187000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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