Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10233086	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10953707	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17492961	0.88[JPT][hapmap]
rs2729532	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2729533	0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2729539	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4727765	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4730513	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4730522	1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62473136	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62473142	0.90[ASN][1000 genomes]
rs62473155	0.86[ASN][1000 genomes]
rs6971586	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6971683	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6972306	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757193	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7790943	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7791520	0.81[ASN][1000 genomes]
rs7792170	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7792614	0.97[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7795136	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7810513	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531435	chr7:111333900-111926292	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111848000-111892800	Weak transcription	Primary B cells from cord blood	blood
2	chr7:111863800-111900200	Weak transcription	Left Ventricle	heart
3	chr7:111876800-111891800	Weak transcription	Primary T cells from cord blood	blood
4	chr7:111877000-111893600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:111879400-111903000	Weak transcription	Psoas Muscle	Psoas
6	chr7:111879600-111888800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:111879600-111894400	Weak transcription	Pancreas	Pancrea
8	chr7:111879800-111906200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:111881800-111906400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:111883400-111897000	Weak transcription	HepG2	liver
11	chr7:111884000-111891200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:111884400-111890800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:111885400-111891400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:111885800-111890800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:111887000-111892200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:111888000-111888400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
17	chr7:111888200-111889600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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