Variant report

Variant	rs6948050
Chromosome Location	chr7:13198861-13198862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10046470	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10046588	0.96[ASN][1000 genomes]
rs1008992	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10226477	0.96[ASN][1000 genomes]
rs10246813	0.89[ASN][1000 genomes]
rs10248755	0.90[ASN][1000 genomes]
rs10264187	0.96[ASN][1000 genomes]
rs10269259	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10488253	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10950442	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10950443	0.97[ASN][1000 genomes]
rs12113090	0.81[CHB][hapmap]
rs12531363	0.81[CHB][hapmap]
rs12538495	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12540940	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12540941	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12666139	0.89[ASN][1000 genomes]
rs12666706	0.92[ASN][1000 genomes]
rs12670246	0.88[ASN][1000 genomes]
rs12674089	0.96[ASN][1000 genomes]
rs12699454	0.89[ASN][1000 genomes]
rs13233335	0.89[ASN][1000 genomes]
rs17166756	0.81[CHB][hapmap]
rs17166877	0.92[ASN][1000 genomes]
rs1860269	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1981639	0.82[CHB][hapmap]
rs2012648	0.96[ASN][1000 genomes]
rs2041234	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2191043	0.81[CHB][hapmap]
rs2357202	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2884119	0.89[ASN][1000 genomes]
rs2884120	0.89[ASN][1000 genomes]
rs35489469	0.86[ASN][1000 genomes]
rs35806796	0.96[ASN][1000 genomes]
rs4236278	0.82[CHB][hapmap]
rs4255030	0.81[ASN][1000 genomes]
rs4721187	0.87[ASN][1000 genomes]
rs6461007	0.82[CHB][hapmap]
rs66927161	0.92[ASN][1000 genomes]
rs67645508	0.89[ASN][1000 genomes]
rs6948643	0.90[ASN][1000 genomes]
rs6964343	0.97[ASN][1000 genomes]
rs6964875	0.83[CHB][hapmap]
rs6973386	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6974627	0.82[CHB][hapmap]
rs71538818	0.92[ASN][1000 genomes]
rs718814	0.89[ASN][1000 genomes]
rs725435	0.85[ASN][1000 genomes]
rs758400	0.96[ASN][1000 genomes]
rs7776609	0.90[ASN][1000 genomes]
rs7778141	0.89[ASN][1000 genomes]
rs7779878	0.97[ASN][1000 genomes]
rs7784835	0.87[ASN][1000 genomes]
rs7785396	0.87[ASN][1000 genomes]
rs7785416	0.89[ASN][1000 genomes]
rs7788484	0.82[CHB][hapmap]
rs7789970	0.82[CHB][hapmap]
rs7790328	0.82[CHB][hapmap]
rs7790665	0.82[CHB][hapmap]
rs7790770	0.81[CHB][hapmap]
rs7796940	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7799843	0.89[ASN][1000 genomes]
rs7800770	0.88[ASN][1000 genomes]
rs7804111	0.89[ASN][1000 genomes]
rs7804393	0.89[ASN][1000 genomes]
rs917491	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9632583	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9638688	0.86[ASN][1000 genomes]
rs9639142	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1019173	chr7:13063854-13585360	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv538737	chr7:13063854-13585360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv887643	chr7:13086613-13211263	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1034496	chr7:13102902-13275542	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1030795	chr7:13111069-13242350	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1019238	chr7:13129616-13248483	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv2764039	chr7:13130069-13224373	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1020790	chr7:13130069-13365778	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv887644	chr7:13130646-13220153	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv887645	chr7:13132400-13220153	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv887646	chr7:13137142-13237390	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1015724	chr7:13143412-13242350	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv887647	chr7:13146222-13262586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1020652	chr7:13167453-13258217	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv464385	chr7:13190950-13213202	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv606248	chr7:13190950-13213202	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv887648	chr7:13190950-13268915	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv1018400	chr7:13196288-13308474	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13193600-13199000	Weak transcription	Fetal Kidney	kidney
2	chr7:13198400-13199000	Enhancers	Brain Germinal Matrix	brain
3	chr7:13198800-13199400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:13198800-13199600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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