Variant report

Variant	rs6948165
Chromosome Location	chr7:121161199-121161200
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121156175..121158638-chr7:121159425..121162281,4	K562	blood:
2	chr7:121154838..121156881-chr7:121159620..121161835,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10234763	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11768475	0.82[ASN][1000 genomes]
rs11770272	0.83[ASN][1000 genomes]
rs11977460	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11978831	0.87[ASN][1000 genomes]
rs11979236	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1406192	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1406193	0.87[ASN][1000 genomes]
rs17143495	0.82[ASN][1000 genomes]
rs17143500	0.82[ASN][1000 genomes]
rs1830308	0.87[ASN][1000 genomes]
rs2402580	0.81[ASN][1000 genomes]
rs56263246	0.87[ASN][1000 genomes]
rs58130666	0.83[ASN][1000 genomes]
rs58302670	0.85[ASN][1000 genomes]
rs59102661	0.82[ASN][1000 genomes]
rs59320957	0.85[ASN][1000 genomes]
rs6952513	0.82[ASN][1000 genomes]
rs6964469	0.84[ASN][1000 genomes]
rs6970940	0.84[ASN][1000 genomes]
rs73225223	0.85[ASN][1000 genomes]
rs73225231	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73225236	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73717388	0.84[ASN][1000 genomes]
rs73717390	0.89[ASN][1000 genomes]
rs73717391	0.89[ASN][1000 genomes]
rs73717392	0.83[ASN][1000 genomes]
rs73717393	0.87[ASN][1000 genomes]
rs73717402	0.82[ASN][1000 genomes]
rs73719803	0.82[ASN][1000 genomes]
rs73719804	0.82[ASN][1000 genomes]
rs73719806	0.84[ASN][1000 genomes]
rs73719807	0.84[ASN][1000 genomes]
rs73719811	0.82[ASN][1000 genomes]
rs7455326	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792771	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv428507	chr7:121037303-121191934	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121152600-121161600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:121159600-121161200	Enhancers	NHDF-Ad	bronchial
3	chr7:121159600-121161800	Enhancers	Colon Smooth Muscle	Colon
4	chr7:121160200-121161400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:121160400-121162400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:121160400-121162400	Enhancers	Rectal Smooth Muscle	rectum
7	chr7:121160800-121161800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:121160800-121165000	Weak transcription	Osteobl	bone
9	chr7:121160800-121165200	Weak transcription	Adipose Nuclei	Adipose
10	chr7:121161000-121162400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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