Variant report

Variant	rs6949099
Chromosome Location	chr7:129233478-129233479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10268760	0.83[AFR][1000 genomes]
rs12540333	0.81[ASN][1000 genomes]
rs13233824	0.81[ASN][1000 genomes]
rs2402956	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402957	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34002378	0.81[ASN][1000 genomes]
rs34159564	0.81[ASN][1000 genomes]
rs34947551	0.81[ASN][1000 genomes]
rs35366849	0.81[ASN][1000 genomes]
rs6467254	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129229800-129236000	Enhancers	A549	lung
2	chr7:129231800-129233800	Enhancers	Placenta	Placenta
3	chr7:129231800-129237000	Enhancers	Osteobl	bone
4	chr7:129232200-129233600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr7:129232600-129234200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:129232600-129234600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:129232600-129246000	Weak transcription	HMEC	breast
8	chr7:129232600-129246800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:129232800-129234000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:129232800-129234200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:129233000-129234400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:129233400-129233600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:129233400-129246600	Weak transcription	NHEK	skin
14	chr7:129233400-129247400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links