Variant report

Variant	rs6949424
Chromosome Location	chr7:19064834-19064835
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10227798	0.86[AFR][1000 genomes]
rs10249251	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10256989	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19061400-19065800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr7:19063400-19067200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:19064400-19065800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:19064400-19065800	Weak transcription	NHEK	skin
5	chr7:19064400-19066000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:19064400-19066600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:19064400-19084800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:19064400-19084800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:19064600-19065800	Weak transcription	HMEC	breast
10	chr7:19064600-19065800	Weak transcription	NHDF-Ad	bronchial
11	chr7:19064600-19066000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:19064600-19066000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:19064600-19066000	Weak transcription	NH-A	brain
14	chr7:19064600-19066000	Weak transcription	Osteobl	bone
15	chr7:19064600-19069600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:19064600-19069600	Weak transcription	HSMM	muscle
17	chr7:19064600-19070000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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