Variant report

Variant	rs6950368
Chromosome Location	chr7:140033449-140033450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140033447..140036058-chr7:140037925..140039670,2	K562	blood:
2	chr7:139875309..139878059-chr7:140031585..140033798,3	K562	blood:
3	chr7:140033361..140035282-chr7:140035718..140037370,2	K562	blood:

Variant related genes	Relation type
ENSG00000260231	Chromatin interaction
ENSG00000006459	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10085561	0.81[ASN][1000 genomes]
rs10085565	0.83[ASN][1000 genomes]
rs28813703	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140016200-140034000	Weak transcription	Pancreas	Pancrea
2	chr7:140016800-140034200	Weak transcription	Small Intestine	intestine
3	chr7:140017600-140033600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:140017600-140034000	Weak transcription	HMEC	breast
5	chr7:140023800-140033800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:140024000-140048800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:140026000-140033800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:140026000-140033800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:140026000-140034400	Weak transcription	Gastric	stomach
10	chr7:140026000-140040800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:140026000-140040800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr7:140026200-140033600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:140026200-140033800	Weak transcription	Placenta	Placenta
14	chr7:140026200-140034000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:140026200-140034000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:140026200-140034000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:140026200-140034000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr7:140026200-140034000	Weak transcription	Fetal Kidney	kidney
19	chr7:140026200-140034000	Weak transcription	Right Ventricle	heart
20	chr7:140026200-140034000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:140026200-140034000	Weak transcription	Spleen	Spleen
22	chr7:140026200-140034000	Weak transcription	Dnd41	blood
23	chr7:140026200-140034000	Weak transcription	NHLF	lung
24	chr7:140026200-140034200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr7:140026200-140034200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr7:140026200-140034400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:140026200-140034400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr7:140026200-140034400	Weak transcription	Hela-S3	cervix
29	chr7:140026200-140034600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr7:140026200-140038200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr7:140026200-140048600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr7:140026400-140033800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr7:140026400-140033800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr7:140026400-140034000	Weak transcription	Fetal Lung	lung
35	chr7:140026400-140034000	Weak transcription	Thymus	Thymus
36	chr7:140026400-140034000	Weak transcription	A549	lung
37	chr7:140026400-140034200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr7:140026400-140034200	Weak transcription	NHEK	skin
39	chr7:140026400-140034400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:140026400-140034400	Weak transcription	GM12878-XiMat	blood
41	chr7:140026400-140040200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr7:140026400-140041000	Weak transcription	NHDF-Ad	bronchial
43	chr7:140026400-140041800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr7:140026600-140033600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:140026600-140034000	Weak transcription	K562	blood
46	chr7:140026600-140034200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:140026600-140034200	Weak transcription	Ovary	ovary
48	chr7:140026600-140041000	Weak transcription	Colon Smooth Muscle	Colon
49	chr7:140026600-140051600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr7:140026600-140060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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