Variant report

Variant	rs6950700
Chromosome Location	chr7:78108045-78108046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11973630	0.95[EUR][1000 genomes]
rs11977168	0.95[EUR][1000 genomes]
rs11977779	0.94[EUR][1000 genomes]
rs12667712	0.95[EUR][1000 genomes]
rs17147836	0.87[ASN][1000 genomes]
rs17150878	0.97[ASN][1000 genomes]
rs17150898	0.96[ASN][1000 genomes]
rs2192646	0.92[EUR][1000 genomes]
rs2192647	0.92[EUR][1000 genomes]
rs2215933	0.86[EUR][1000 genomes]
rs2362610	0.94[EUR][1000 genomes]
rs34403226	0.83[EUR][1000 genomes]
rs35454028	0.90[EUR][1000 genomes]
rs55777644	0.85[ASN][1000 genomes]
rs56040565	0.96[ASN][1000 genomes]
rs56139883	0.96[ASN][1000 genomes]
rs6466243	0.95[EUR][1000 genomes]
rs67578259	0.83[EUR][1000 genomes]
rs6951193	0.96[EUR][1000 genomes]
rs73150359	0.96[ASN][1000 genomes]
rs73150374	0.85[ASN][1000 genomes]
rs7780645	0.95[EUR][1000 genomes]
rs7780794	0.95[EUR][1000 genomes]
rs7784896	0.92[EUR][1000 genomes]
rs7804602	0.83[EUR][1000 genomes]
rs7804616	0.82[EUR][1000 genomes]
rs7804932	0.90[EUR][1000 genomes]
rs9640709	0.95[EUR][1000 genomes]
rs9641412	0.95[EUR][1000 genomes]
rs972544	0.95[EUR][1000 genomes]
rs974346	0.95[EUR][1000 genomes]
rs974347	0.96[EUR][1000 genomes]
rs975421	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78102200-78108200	Weak transcription	Ovary	ovary
2	chr7:78103000-78117600	Weak transcription	Fetal Brain Female	brain
3	chr7:78103400-78108600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:78103400-78108600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:78103800-78115600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:78104400-78116800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:78105600-78113800	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:78106200-78113200	Weak transcription	Brain Anterior Caudate	brain
9	chr7:78106400-78113600	Weak transcription	Brain Substantia Nigra	brain
10	chr7:78106600-78108200	Weak transcription	Osteobl	bone
11	chr7:78106600-78108600	Weak transcription	HSMM	muscle
12	chr7:78106600-78114000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr7:78106600-78117000	Weak transcription	Brain Germinal Matrix	brain
14	chr7:78106800-78108200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:78108000-78108200	Weak transcription	Psoas Muscle	Psoas
16	chr7:78108000-78108400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:78108000-78108400	Enhancers	HepG2	liver
18	chr7:78108000-78109600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:78108000-78109600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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