Variant report

Variant	rs6951875
Chromosome Location	chr7:103632175-103632176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1858815	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34581444	0.83[EUR][1000 genomes]
rs4727583	0.81[GIH][hapmap]
rs6943822	0.81[GIH][hapmap]
rs6952315	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6951875	PIK3CG	cis	cerebellum	SCAN
rs6951875	AP1S1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103629400-103632200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr7:103631200-103632200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
3	chr7:103631400-103632200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:103631600-103636200	Enhancers	K562	blood
5	chr7:103631800-103632800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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