Variant report

Variant	rs6953153
Chromosome Location	chr7:138258578-138258579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138246609..138249506-chr7:138257780..138259380,2	K562	blood:
2	chr6:27100807..27103130-chr7:138256613..138259241,2	MCF-7	breast:
3	chr7:138257087..138259853-chr7:138260870..138262972,2	K562	blood:

Variant related genes	Relation type
ENSG00000196787	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35668636	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138242600-138272400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:138250200-138273800	Weak transcription	Gastric	stomach
3	chr7:138250400-138267600	Weak transcription	NHLF	lung
4	chr7:138250400-138272000	Weak transcription	Small Intestine	intestine
5	chr7:138250400-138273000	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:138250600-138263800	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:138250600-138264000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr7:138250600-138270600	Weak transcription	Fetal Brain Male	brain
9	chr7:138250600-138271800	Weak transcription	Right Ventricle	heart
10	chr7:138250600-138273000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr7:138250600-138273400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:138250800-138263800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:138250800-138264000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:138250800-138272400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:138250800-138272600	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr7:138250800-138273200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:138251000-138264000	Weak transcription	Psoas Muscle	Psoas
18	chr7:138251000-138267800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr7:138251000-138272800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:138251000-138272800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr7:138251200-138272800	Strong transcription	Fetal Thymus	thymus
22	chr7:138251200-138273000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:138251400-138259000	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr7:138251400-138259200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:138251400-138259600	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr7:138251400-138259600	Strong transcription	Duodenum Mucosa	Duodenum
27	chr7:138251400-138260600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr7:138251400-138262000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr7:138251400-138263600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr7:138251400-138266200	Strong transcription	Primary B cells from cord blood	blood
31	chr7:138251400-138270800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr7:138251400-138273000	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr7:138251400-138273000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:138251600-138258800	Strong transcription	Placenta	Placenta
35	chr7:138251600-138265400	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr7:138251600-138273200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:138251800-138258600	Weak transcription	Fetal Heart	heart
38	chr7:138251800-138259000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:138251800-138264000	Weak transcription	NHDF-Ad	bronchial
40	chr7:138252000-138259000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr7:138252000-138264000	Weak transcription	Colonic Mucosa	Colon
42	chr7:138252000-138266600	Strong transcription	Primary T cells from cord blood	blood
43	chr7:138252000-138270800	Strong transcription	HepG2	liver
44	chr7:138252000-138272800	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr7:138252200-138259000	Strong transcription	Adipose Nuclei	Adipose
46	chr7:138252200-138261200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr7:138252200-138263600	Weak transcription	Colon Smooth Muscle	Colon
48	chr7:138252200-138270400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr7:138252200-138271800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr7:138252200-138272200	Strong transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links