Variant report

Variant	rs6953401
Chromosome Location	chr7:22362011-22362012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22356795..22360587-chr7:22360878..22363987,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10226205	0.81[YRI][hapmap]
rs10272123	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12333614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7780427	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22282200-22364400	Weak transcription	Esophagus	oesophagus
2	chr7:22337000-22362600	Weak transcription	Brain Anterior Caudate	brain
3	chr7:22340600-22369800	Weak transcription	Gastric	stomach
4	chr7:22340800-22365000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:22342200-22373200	Weak transcription	Lung	lung
6	chr7:22348000-22363800	Weak transcription	GM12878-XiMat	blood
7	chr7:22352800-22364600	Weak transcription	Stomach Mucosa	stomach
8	chr7:22354800-22362200	Weak transcription	Thymus	Thymus
9	chr7:22354800-22366400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:22355000-22371800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:22358600-22362200	Weak transcription	Fetal Thymus	thymus
12	chr7:22358600-22369400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:22360000-22362400	Weak transcription	Dnd41	blood
14	chr7:22360200-22362400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:22360200-22363600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:22360200-22364400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:22360200-22368200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:22360200-22368200	Weak transcription	Fetal Intestine Small	intestine
19	chr7:22360400-22363600	Weak transcription	HepG2	liver
20	chr7:22360400-22364400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:22360400-22366000	Weak transcription	Fetal Intestine Large	intestine
22	chr7:22360600-22367200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:22360600-22368200	Weak transcription	K562	blood
24	chr7:22360600-22372400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:22360800-22368400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr7:22361200-22362600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr7:22361600-22362800	Enhancers	Pancreas	Pancrea
28	chr7:22361800-22363400	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr7:22362000-22366000	Enhancers	Rectal Mucosa Donor 31	rectum

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