Variant report

Variant	rs6953716
Chromosome Location	chr7:70902299-70902300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6947905	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70886200-70903600	Weak transcription	Aorta	Aorta
2	chr7:70888200-70923000	Weak transcription	Ovary	ovary
3	chr7:70889600-70907600	Weak transcription	Fetal Lung	lung
4	chr7:70891800-70907400	Weak transcription	Fetal Muscle Leg	muscle
5	chr7:70898400-70903600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:70898400-70907800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:70899000-70904600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:70899600-70902400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:70899600-70909200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:70899800-70902400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:70899800-70902800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr7:70900000-70902600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chr7:70900000-70903400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:70900200-70902600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr7:70901200-70902600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
16	chr7:70901200-70903400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
17	chr7:70901800-70902600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
18	chr7:70901800-70902800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr7:70901800-70903000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:70902000-70907800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links