Variant report

Variant	rs6954575
Chromosome Location	chr7:106650540-106650541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106434508..106436561-chr7:106648488..106651833,3	K562	blood:
2	chr7:106589625..106592294-chr7:106649925..106652158,3	K562	blood:
3	chr7:106648480..106651260-chr7:106759004..106761644,2	K562	blood:
4	chr7:106649275..106650876-chr7:106794605..106796964,2	K562	blood:
5	chr7:106589188..106592406-chr7:106649925..106652181,4	K562	blood:
6	chr7:106603700..106606152-chr7:106649683..106651985,2	K562	blood:
7	chr7:106647954..106652230-chr7:106807016..106810496,6	K562	blood:
8	chr7:106298401..106300209-chr7:106650184..106651909,2	K562	blood:
9	chr7:106416260..106420123-chr7:106648686..106652842,6	K562	blood:
10	chr7:106302378..106305137-chr7:106649750..106651726,2	K562	blood:
11	chr7:106298709..106300990-chr7:106650184..106652265,2	K562	blood:
12	chr7:106413736..106418579-chr7:106648986..106652842,4	K562	blood:
13	chr7:106434508..106436238-chr7:106649057..106651092,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10234225	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12113322	0.87[EUR][1000 genomes]
rs17153745	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7795821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798500	0.86[EUR][1000 genomes]
rs7807247	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs849304	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106648600-106651000	Enhancers	Fetal Heart	heart
2	chr7:106648800-106654600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:106649000-106651000	Weak transcription	Placenta	Placenta
4	chr7:106649000-106654400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:106650400-106651400	Flanking Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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