Variant report

Variant	rs6954644
Chromosome Location	chr7:48634109-48634110
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10249768	0.80[AFR][1000 genomes]
rs10260178	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10276788	0.85[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12533507	1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs1368656	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs1405919	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1527837	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1881078	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs1918611	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1918612	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4464912	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4551288	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4917163	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48600400-48634200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48632600-48637000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:48633600-48634400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:48634000-48640200	Strong transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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