Variant report

Variant	rs6955273
Chromosome Location	chr7:98709087-98709088
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98708110..98711722-chr7:98740191..98742294,3	MCF-7	breast:
2	chr7:98707445..98709185-chr7:98709231..98712215,2	K562	blood:
3	chr7:98705746..98709744-chr7:98739368..98742285,3	MCF-7	breast:
4	chr7:98706945..98709211-chr7:98711073..98713385,2	K562	blood:
5	chr7:98707262..98709177-chr7:98722207..98724436,2	MCF-7	breast:
6	chr7:98702619..98704754-chr7:98708950..98710841,2	MCF-7	breast:
7	chr7:98688775..98691323-chr7:98706983..98709167,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10231389	0.82[AFR][1000 genomes]
rs1115930	0.82[AFR][1000 genomes]
rs12705023	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4292617	0.83[AFR][1000 genomes]
rs4510778	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4604368	0.80[AFR][1000 genomes]
rs6975671	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98697400-98709200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr7:98697400-98717600	Weak transcription	Dnd41	blood
3	chr7:98698200-98709400	Weak transcription	Fetal Intestine Small	intestine
4	chr7:98702600-98710200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:98703200-98710200	Enhancers	HMEC	breast
6	chr7:98703400-98711200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:98703800-98711000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:98704400-98710200	Enhancers	Brain Hippocampus Middle	brain
9	chr7:98704600-98709600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:98704600-98710200	Enhancers	Brain Angular Gyrus	brain
11	chr7:98704600-98710400	Enhancers	NHEK	skin
12	chr7:98705000-98710400	Enhancers	HSMM	muscle
13	chr7:98705200-98711000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr7:98705400-98710200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr7:98705600-98709200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:98705800-98709800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:98705800-98711600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:98705800-98719400	Weak transcription	Fetal Kidney	kidney
19	chr7:98706000-98710000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:98706400-98709400	Enhancers	Hela-S3	cervix
21	chr7:98706400-98710400	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr7:98706600-98710600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr7:98706800-98710400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr7:98707200-98709200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr7:98707200-98709200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr7:98707200-98709200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:98707200-98709200	Weak transcription	Colonic Mucosa	Colon
28	chr7:98707200-98709200	Weak transcription	Esophagus	oesophagus
29	chr7:98707200-98709200	Weak transcription	Fetal Thymus	thymus
30	chr7:98707200-98709200	Weak transcription	Pancreas	Pancrea
31	chr7:98707200-98709200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr7:98707200-98709200	Weak transcription	Stomach Mucosa	stomach
33	chr7:98707200-98709200	Weak transcription	GM12878-XiMat	blood
34	chr7:98707200-98709400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:98707200-98709400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr7:98707200-98709400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr7:98707200-98709400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr7:98707200-98709400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr7:98707200-98709400	Weak transcription	Psoas Muscle	Psoas
40	chr7:98707200-98709400	Weak transcription	Spleen	Spleen
41	chr7:98707200-98709800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr7:98707200-98710200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:98707200-98710200	Enhancers	Brain Anterior Caudate	brain
44	chr7:98707200-98710200	Enhancers	Brain Substantia Nigra	brain
45	chr7:98707200-98710400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr7:98707200-98710400	Enhancers	NHLF	lung
47	chr7:98707200-98710400	Enhancers	Osteobl	bone
48	chr7:98707200-98712000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr7:98707200-98713000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:98707200-98717000	Weak transcription	Fetal Stomach	stomach

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