Variant report

Variant	rs6955401
Chromosome Location	chr7:98909815-98909816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000002079	Chromatin interaction
ENSG00000106244	Chromatin interaction
ENSG00000106245	Chromatin interaction
ENSG00000241685	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11771702	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12112936	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12113440	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6957987	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6958704	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6973408	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs733991	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9969217	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9969386	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98903800-98910400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:98906400-98910200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:98906800-98912000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:98907200-98910400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:98908000-98917800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:98908200-98910000	Weak transcription	A549	lung
7	chr7:98908200-98922600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:98908400-98910000	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:98908400-98921800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:98908400-98923000	Weak transcription	Aorta	Aorta
11	chr7:98908600-98910200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:98909200-98910400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:98909200-98912400	Enhancers	Stomach Mucosa	stomach
14	chr7:98909400-98910400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:98909800-98910000	Weak transcription	HMEC	breast
16	chr7:98909800-98910400	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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