Variant report

Variant	rs6956333
Chromosome Location	chr7:39867793-39867794
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73687375	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687376	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73687377	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv887974	chr7:39827400-39956829	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv887975	chr7:39858378-40124137	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39865800-39867800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:39866400-39868000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:39866600-39868200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:39866600-39868200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:39866600-39872400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:39866800-39872400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:39867000-39868600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:39867400-39869200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr7:39867600-39868600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:39867600-39868800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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