Variant report

Variant	rs695659
Chromosome Location	chr22:28871070-28871071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1125250	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs134526	0.85[ASN][1000 genomes]
rs134541	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs134543	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs134548	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs134551	0.89[ASN][1000 genomes]
rs2346397	0.92[ASN][1000 genomes]
rs2346867	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34593692	0.85[EUR][1000 genomes]
rs695272	0.93[ASN][1000 genomes]
rs695439	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs695591	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs695625	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs695762	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs695796	0.90[ASN][1000 genomes]
rs695797	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916473	chr22:28837041-29215603	Weak transcription Bivalent Enhancer Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28861400-28875800	Weak transcription	Fetal Muscle Leg	muscle
2	chr22:28861600-28880200	Weak transcription	Ovary	ovary
3	chr22:28862800-28874800	Weak transcription	Fetal Brain Female	brain
4	chr22:28867800-28873600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr22:28869000-28873600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr22:28869600-28871400	Enhancers	Fetal Intestine Large	intestine
7	chr22:28870600-28871200	Weak transcription	Fetal Intestine Small	intestine
8	chr22:28870800-28874800	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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