Variant report

Variant	rs6956903
Chromosome Location	chr7:121040906-121040907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:121038659..121042008-chr7:121051096..121053967,4	K562	blood:
2	chr7:121040519..121042218-chr7:121046116..121048635,2	K562	blood:
3	chr7:121040208..121042510-chr7:121052068..121053591,2	K562	blood:
4	chr7:121040420..121043103-chr7:121184130..121186484,2	MCF-7	breast:
5	chr7:121034674..121038453-chr7:121040021..121045279,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196937	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10250624	0.93[ASN][1000 genomes]
rs10250907	0.93[ASN][1000 genomes]
rs11768996	0.93[ASN][1000 genomes]
rs11770098	0.93[ASN][1000 genomes]
rs11771477	0.93[ASN][1000 genomes]
rs12706336	0.93[ASN][1000 genomes]
rs12706337	0.93[ASN][1000 genomes]
rs12706338	0.93[ASN][1000 genomes]
rs12706340	0.93[ASN][1000 genomes]
rs12706341	0.93[ASN][1000 genomes]
rs12706342	0.93[ASN][1000 genomes]
rs1990447	0.93[ASN][1000 genomes]
rs2041490	0.93[ASN][1000 genomes]
rs2240982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2254591	0.93[ASN][1000 genomes]
rs2536153	0.93[ASN][1000 genomes]
rs2536155	0.93[ASN][1000 genomes]
rs2536156	0.93[ASN][1000 genomes]
rs2536157	0.93[ASN][1000 genomes]
rs2536159	0.93[ASN][1000 genomes]
rs2536160	0.93[ASN][1000 genomes]
rs2536163	0.93[ASN][1000 genomes]
rs2536164	0.93[ASN][1000 genomes]
rs2536165	0.93[ASN][1000 genomes]
rs2536166	0.93[ASN][1000 genomes]
rs2536167	0.93[ASN][1000 genomes]
rs2536168	0.93[ASN][1000 genomes]
rs2536170	0.93[ASN][1000 genomes]
rs2536173	0.93[ASN][1000 genomes]
rs2536174	0.93[ASN][1000 genomes]
rs2536175	0.93[ASN][1000 genomes]
rs2536176	0.93[ASN][1000 genomes]
rs2536178	0.93[ASN][1000 genomes]
rs2536179	0.93[ASN][1000 genomes]
rs2536184	0.93[ASN][1000 genomes]
rs2536188	0.90[ASN][1000 genomes]
rs2536190	0.90[ASN][1000 genomes]
rs2536191	0.88[ASN][1000 genomes]
rs2707461	0.93[ASN][1000 genomes]
rs2707462	0.87[ASN][1000 genomes]
rs2707463	0.93[ASN][1000 genomes]
rs2707465	0.93[ASN][1000 genomes]
rs2707467	0.90[ASN][1000 genomes]
rs2707470	0.90[ASN][1000 genomes]
rs2707472	0.90[ASN][1000 genomes]
rs2707473	0.90[ASN][1000 genomes]
rs2707474	0.90[ASN][1000 genomes]
rs2707475	0.93[ASN][1000 genomes]
rs2707476	0.93[ASN][1000 genomes]
rs2707477	0.93[ASN][1000 genomes]
rs2707478	0.93[ASN][1000 genomes]
rs2707479	0.93[ASN][1000 genomes]
rs2707480	0.93[ASN][1000 genomes]
rs2707481	0.93[ASN][1000 genomes]
rs2707482	0.93[ASN][1000 genomes]
rs2707491	0.93[ASN][1000 genomes]
rs2707492	0.93[ASN][1000 genomes]
rs2707496	0.93[ASN][1000 genomes]
rs2707503	0.84[ASN][1000 genomes]
rs2707504	0.93[ASN][1000 genomes]
rs2707505	0.93[ASN][1000 genomes]
rs2707507	0.93[ASN][1000 genomes]
rs2707516	0.90[ASN][1000 genomes]
rs2908006	0.88[ASN][1000 genomes]
rs2908010	0.88[ASN][1000 genomes]
rs2952564	0.93[ASN][1000 genomes]
rs56293108	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57275855	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60736586	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6954568	0.82[ASN][1000 genomes]
rs6972181	0.88[ASN][1000 genomes]
rs6972247	0.82[ASN][1000 genomes]
rs73440208	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73440215	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73440221	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73720406	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7780789	0.88[ASN][1000 genomes]
rs7782648	0.88[ASN][1000 genomes]
rs7785478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7792993	0.93[ASN][1000 genomes]
rs997782	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2755350	chr7:120848049-121119049	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv428507	chr7:121037303-121191934	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv966879	chr7:121037613-121041162	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121036800-121041400	Weak transcription	HSMM	muscle
2	chr7:121036800-121043800	Weak transcription	Ovary	ovary
3	chr7:121037000-121041000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:121037000-121041400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:121037000-121041400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:121037000-121041600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:121037000-121042000	Weak transcription	NHDF-Ad	bronchial
8	chr7:121037000-121042600	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:121040400-121041600	Weak transcription	Osteobl	bone
10	chr7:121040600-121043400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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