Variant report

Variant	rs6957538
Chromosome Location	chr7:3794233-3794234
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3793998..3797473-chr7:3798195..3801316,4	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10232141	0.85[ASN][1000 genomes]
rs12540241	0.92[CHB][hapmap]
rs1986132	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs35459481	0.91[ASN][1000 genomes]
rs6969732	0.92[CHB][hapmap]
rs6974594	1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs6975070	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs73032355	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1017868	chr7:3698885-3820159	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1021443	chr7:3705273-3889334	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv605935	chr7:3713194-3799580	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1019582	chr7:3718061-3814514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv538682	chr7:3718061-3814514	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1022650	chr7:3723035-3847680	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1024704	chr7:3736254-3831859	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1031610	chr7:3744536-3838844	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1031999	chr7:3782751-3847680	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv538683	chr7:3782751-3847680	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv2756505	chr7:3789992-3856544	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv605937	chr7:3792038-3836379	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv605938	chr7:3792038-3852261	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1024292	chr7:3792949-3838578	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3344548	chr7:3793426-3797924	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3773000-3820000	Weak transcription	Pancreas	Pancrea
2	chr7:3780200-3795400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:3782600-3800200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:3792800-3801800	Weak transcription	Gastric	stomach
5	chr7:3793000-3795000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:3793000-3795000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:3793200-3794400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:3793200-3794800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:3793200-3795000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:3793200-3795000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:3793200-3795000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:3793200-3795400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:3793400-3796600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr7:3793600-3794400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:3793600-3794600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:3793600-3794800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:3793600-3795000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:3793600-3795000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:3793600-3795600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:3793800-3795000	Enhancers	Fetal Brain Male	brain
21	chr7:3794000-3794400	Flanking Active TSS	Brain Cingulate Gyrus	brain
22	chr7:3794000-3794400	Enhancers	Fetal Brain Female	brain
23	chr7:3794000-3794400	Enhancers	Fetal Heart	heart
24	chr7:3794000-3794400	Enhancers	Fetal Lung	lung
25	chr7:3794000-3795000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr7:3794000-3795000	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr7:3794000-3795200	Active TSS	Brain Anterior Caudate	brain
28	chr7:3794000-3795200	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr7:3794200-3794400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:3794200-3794400	Flanking Active TSS	Brain Substantia Nigra	brain
31	chr7:3794200-3794600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:3794200-3794600	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr7:3794200-3794800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:3794200-3794800	Active TSS	Brain Angular Gyrus	brain
35	chr7:3794200-3795000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:3794200-3795000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr7:3794200-3795000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:3794200-3795000	Enhancers	Fetal Muscle Leg	muscle
39	chr7:3794200-3795200	Flanking Active TSS	Brain Germinal Matrix	brain
40	chr7:3794200-3795200	Active TSS	Brain Hippocampus Middle	brain
41	chr7:3794200-3795200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr7:3794200-3795200	Enhancers	Fetal Stomach	stomach
43	chr7:3794200-3795200	Flanking Active TSS	NH-A	brain
44	chr7:3794200-3795200	Active TSS	Osteobl	bone

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