Variant report

Variant	rs6957607
Chromosome Location	chr7:50564187-50564188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1037351	0.81[AFR][1000 genomes]
rs1137337	0.82[AFR][1000 genomes]
rs11575372	0.92[EUR][1000 genomes]
rs11575383	0.96[EUR][1000 genomes]
rs11575387	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11575422	0.88[AFR][1000 genomes]
rs11575434	0.96[EUR][1000 genomes]
rs11575438	0.83[AFR][1000 genomes]
rs17133853	0.87[AFR][1000 genomes]
rs2167364	0.81[AFR][1000 genomes]
rs2329368	0.81[AFR][1000 genomes]
rs3779084	0.82[AFR][1000 genomes]
rs56069386	0.83[AFR][1000 genomes]
rs58085392	0.85[AFR][1000 genomes]
rs59239231	0.83[AFR][1000 genomes]
rs6951648	0.85[AFR][1000 genomes]
rs7793185	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv888021	chr7:50538589-50610071	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv606905	chr7:50544063-50565963	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50543600-50595000	Weak transcription	Liver	Liver
2	chr7:50545800-50565800	Weak transcription	HepG2	liver
3	chr7:50548800-50564400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:50557400-50564200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:50559600-50564200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:50559600-50564800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr7:50560600-50566200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr7:50560800-50564200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:50560800-50564200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:50560800-50581000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:50561000-50564200	Weak transcription	Gastric	stomach
12	chr7:50561200-50564200	Weak transcription	Spleen	Spleen
13	chr7:50562000-50564400	Weak transcription	Small Intestine	intestine
14	chr7:50562600-50564200	Enhancers	HUVEC	blood vessel
15	chr7:50562800-50566000	Enhancers	Fetal Intestine Large	intestine
16	chr7:50562800-50566200	Enhancers	Primary hematopoietic stem cells	blood
17	chr7:50562800-50566200	Genic enhancers	Fetal Intestine Small	intestine
18	chr7:50563200-50564400	Weak transcription	Adipose Nuclei	Adipose
19	chr7:50563600-50564200	Enhancers	Hela-S3	cervix
20	chr7:50563600-50564200	Enhancers	K562	blood
21	chr7:50563600-50566200	Enhancers	Duodenum Mucosa	Duodenum
22	chr7:50563800-50565200	Enhancers	Lung	lung
23	chr7:50563800-50566000	Enhancers	Stomach Mucosa	stomach
24	chr7:50564000-50565000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr7:50564000-50565400	Enhancers	Placenta	Placenta
26	chr7:50564000-50566200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:50564000-50566200	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links