Variant report

Variant	rs6957965
Chromosome Location	chr7:50237083-50237084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50235390..50237787-chr7:50242570..50244249,2	K562	blood:
2	chr7:50235390..50238226-chr7:50241670..50244249,2	K562	blood:

Variant related genes	Relation type
ENSG00000231681	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13231384	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1379183	0.81[CHB][hapmap]
rs7805803	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1024102	chr7:50195864-50418159	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1020285	chr7:50229750-50258911	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6957965	SOCS3	trans	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50230600-50239000	Weak transcription	Adipose Nuclei	Adipose
2	chr7:50235800-50240200	Enhancers	Fetal Thymus	thymus
3	chr7:50236000-50237600	Enhancers	K562	blood
4	chr7:50236200-50237400	Enhancers	Thymus	Thymus
5	chr7:50236200-50238200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr7:50236400-50237200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:50236600-50237200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:50236600-50237200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr7:50236600-50237400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr7:50236800-50237200	Enhancers	Fetal Intestine Small	intestine
11	chr7:50236800-50237400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:50236800-50237400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:50236800-50237400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:50236800-50237600	Enhancers	GM12878-XiMat	blood
15	chr7:50236800-50237800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:50237000-50237400	Enhancers	Placenta	Placenta
17	chr7:50237000-50237600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr7:50237000-50237600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:50237000-50237600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:50237000-50237600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr7:50237000-50237600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr7:50237000-50237800	Enhancers	HepG2	liver

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