Variant report

Variant	rs6958088
Chromosome Location	chr7:140014294-140014295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139873831..139877475-chr7:140012242..140019161,9	MCF-7	breast:
2	chr7:140003129..140009929-chr7:140011645..140017997,10	MCF-7	breast:
3	chr7:139874735..139878684-chr7:140013731..140018103,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006459	Chromatin interaction
ENSG00000260231	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11764865	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4349904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4361695	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4416746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4448186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4495337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4523161	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4725675	0.90[ASN][1000 genomes]
rs4726768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140004600-140015400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:140006000-140015400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:140008400-140014800	Weak transcription	Stomach Mucosa	stomach
4	chr7:140009400-140014800	Weak transcription	Colonic Mucosa	Colon
5	chr7:140009400-140015000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr7:140010400-140014400	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:140010800-140014400	Weak transcription	Ovary	ovary
8	chr7:140011600-140015600	Weak transcription	NHDF-Ad	bronchial
9	chr7:140011600-140016400	Enhancers	Primary B cells from cord blood	blood
10	chr7:140012400-140014600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr7:140013200-140014600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:140013200-140015000	Weak transcription	Esophagus	oesophagus
13	chr7:140013200-140015000	Weak transcription	Gastric	stomach
14	chr7:140013200-140015600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:140013200-140017800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:140013600-140018600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr7:140013800-140015400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:140013800-140015600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr7:140013800-140016800	Enhancers	Liver	Liver
20	chr7:140014000-140015800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:140014000-140016000	Flanking Active TSS	HepG2	liver
22	chr7:140014200-140014400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr7:140014200-140014400	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr7:140014200-140014600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:140014200-140014600	Enhancers	HMEC	breast

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