Variant report

Variant	rs6959252
Chromosome Location	chr7:25984566-25984567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10280475	0.95[EUR][1000 genomes]
rs11505316	0.97[EUR][1000 genomes]
rs1966840	0.87[EUR][1000 genomes]
rs28856948	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2893223	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4719839	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56367234	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7789194	0.85[ASN][1000 genomes]
rs9639523	0.86[ASN][1000 genomes]
rs9886357	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25980800-25984800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:25980800-25987800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:25980800-25988200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:25980800-25989200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:25980800-25989400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:25981000-25985000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:25981000-25987800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:25981000-25988600	Weak transcription	Fetal Intestine Small	intestine
9	chr7:25981000-25988800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:25981000-25989200	Weak transcription	HMEC	breast
11	chr7:25981400-25987000	Weak transcription	Fetal Thymus	thymus
12	chr7:25981600-25988800	Weak transcription	K562	blood
13	chr7:25984200-25985400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr7:25984200-25985800	Enhancers	NHEK	skin
15	chr7:25984400-25984600	Enhancers	Fetal Intestine Large	intestine
16	chr7:25984400-25984600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr7:25984400-25984800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:25984400-25984800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:25984400-25985000	Enhancers	Fetal Lung	lung
20	chr7:25984400-25985400	Enhancers	Fetal Muscle Leg	muscle
21	chr7:25984400-25985400	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr7:25984400-25985400	Enhancers	Stomach Mucosa	stomach
23	chr7:25984400-25985600	Enhancers	Esophagus	oesophagus
24	chr7:25984400-25985600	Enhancers	Fetal Stomach	stomach
25	chr7:25984400-25985600	Enhancers	Gastric	stomach
26	chr7:25984400-25985600	Enhancers	Pancreas	Pancrea
27	chr7:25984400-25985600	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr7:25984400-25986000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:25984400-25986000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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