Variant report

Variant	rs6959536
Chromosome Location	chr7:78152161-78152162
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10447824	0.85[CEU][hapmap];0.90[GIH][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1468774	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs1468775	0.81[AMR][1000 genomes]
rs2110630	0.89[ASW][hapmap];0.95[CEU][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4730342	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs4730343	0.95[CEU][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6466258	0.80[AMR][1000 genomes]
rs6970459	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs724914	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7787798	0.80[AMR][1000 genomes]
rs7790347	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7806320	0.84[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78128800-78158400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:78138400-78161800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:78144200-78160000	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:78144400-78156400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:78144400-78158200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:78144400-78158600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:78146200-78153200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:78146200-78153600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:78146600-78156400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:78151600-78158400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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