Variant report

Variant	rs6959543
Chromosome Location	chr7:12907076-12907077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:12732435..12735285-chr7:12904992..12907592,2	K562	blood:
2	chr7:12899240..12902196-chr7:12906624..12908887,2	K562	blood:
3	chr7:12906060..12908256-chr7:12910264..12912774,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10229134	0.82[EUR][1000 genomes]
rs10238367	0.82[EUR][1000 genomes]
rs12699428	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12699429	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17619626	0.87[ASN][1000 genomes]
rs1990346	0.82[EUR][1000 genomes]
rs2191265	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2357049	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2357052	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2357053	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs35469032	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4260793	0.84[EUR][1000 genomes]
rs4288267	0.82[EUR][1000 genomes]
rs4719339	0.82[CEU][hapmap]
rs4721153	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs6460985	0.83[EUR][1000 genomes]
rs6460986	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66817397	0.91[ASN][1000 genomes]
rs6942839	0.81[EUR][1000 genomes]
rs6950340	0.89[CEU][hapmap]
rs6959404	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6959850	0.96[ASN][1000 genomes]
rs6960404	0.84[EUR][1000 genomes]
rs6978013	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs758675	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs758676	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7795573	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs7800218	0.93[CEU][hapmap]
rs7800522	0.87[EUR][1000 genomes]
rs7800580	0.82[EUR][1000 genomes]
rs7809081	0.82[EUR][1000 genomes]
rs7810511	0.84[EUR][1000 genomes]
rs7811356	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1027501	chr7:12743592-12927109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12906200-12907200	Weak transcription	K562	blood

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