Variant report

Variant	rs6959565
Chromosome Location	chr7:140047236-140047237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:140047090-140047409	SK-N-SH	brain:	n/a	n/a
2	REST	chr7:140047120-140047381	SK-N-SH	brain:	n/a	n/a
3	TCF12	chr7:140046894-140047574	SK-N-SH	brain:	n/a	n/a
4	EP300	chr7:140046508-140048263	SK-N-SH	brain:	n/a	n/a
5	GATA2	chr7:140046781-140047504	SH-SY5Y	brain:	n/a	chr7:140047224-140047236 chr7:140047229-140047236 chr7:140047233-140047244 chr7:140047222-140047238 chr7:140047223-140047233
6	GATA3	chr7:140046941-140047524	SH-SY5Y	brain:	n/a	chr7:140047224-140047236 chr7:140047229-140047236 chr7:140047233-140047244 chr7:140047222-140047238 chr7:140047223-140047233
7	EP300	chr7:140047065-140047433	SK-N-SH_RA	brain:	n/a	n/a
8	EP300	chr7:140047089-140047431	SK-N-SH_RA	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140046838..140048938-chr7:140050078..140052698,2	K562	blood:

Variant related genes	Relation type
SLC37A3	TF binding region
ENSG00000157800	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10085561	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022919	chr7:140043299-140120546	Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140024000-140048800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:140026200-140048600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr7:140026600-140051600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:140026600-140060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:140033400-140048400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:140033600-140096000	Weak transcription	Stomach Mucosa	stomach
7	chr7:140034800-140047600	Weak transcription	GM12878-XiMat	blood
8	chr7:140034800-140085600	Weak transcription	Psoas Muscle	Psoas
9	chr7:140035000-140052400	Weak transcription	Fetal Kidney	kidney
10	chr7:140035000-140074200	Weak transcription	Right Atrium	heart
11	chr7:140035200-140048400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr7:140035200-140058200	Weak transcription	Small Intestine	intestine
13	chr7:140035200-140060600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:140035400-140048600	Weak transcription	HSMM	muscle
15	chr7:140035600-140047400	Weak transcription	Fetal Heart	heart
16	chr7:140035800-140048600	Weak transcription	Brain Substantia Nigra	brain
17	chr7:140036200-140048400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:140038000-140049000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:140038000-140060200	Strong transcription	Primary T cells from cord blood	blood
20	chr7:140038000-140061000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:140038200-140061200	Strong transcription	Fetal Stomach	stomach
22	chr7:140038600-140055600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:140038600-140056800	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr7:140038600-140060400	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:140038800-140048000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:140038800-140048200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:140039000-140055800	Strong transcription	Liver	Liver
28	chr7:140039200-140048800	Strong transcription	Fetal Thymus	thymus
29	chr7:140039200-140060400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:140039400-140058600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr7:140039600-140054200	Strong transcription	Duodenum Mucosa	Duodenum
32	chr7:140039600-140057400	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr7:140039800-140054800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr7:140039800-140055600	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr7:140040000-140056800	Strong transcription	Fetal Intestine Large	intestine
36	chr7:140040600-140047800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:140040600-140055000	Strong transcription	Primary B cells from cord blood	blood
38	chr7:140040800-140053200	Strong transcription	Spleen	Spleen
39	chr7:140041200-140052600	Strong transcription	Thymus	Thymus
40	chr7:140041800-140047800	Weak transcription	NHDF-Ad	bronchial
41	chr7:140042000-140084800	Weak transcription	Hela-S3	cervix
42	chr7:140043000-140047800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:140043000-140058200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr7:140043000-140060400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr7:140043200-140047600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr7:140043200-140048000	Weak transcription	NHLF	lung
47	chr7:140043200-140048400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr7:140043200-140048400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr7:140043200-140049800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:140043200-140052600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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