Variant report

Variant	rs6959765
Chromosome Location	chr7:22000978-22000979
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1174942	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1174948	0.92[ASN][1000 genomes]
rs2107976	0.90[AFR][1000 genomes]
rs6461625	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6942958	0.86[AFR][1000 genomes]
rs6975963	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7807005	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv870325	chr7:21979039-22120493	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
3	nsv1029966	chr7:21999316-22028266	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21999400-22002800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr7:21999800-22001200	Enhancers	HUVEC	blood vessel
3	chr7:21999800-22002200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:22000000-22001000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:22000000-22001000	Enhancers	HMEC	breast
6	chr7:22000000-22001000	Enhancers	NH-A	brain
7	chr7:22000000-22001000	Enhancers	Osteobl	bone
8	chr7:22000000-22001600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:22000200-22001000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:22000200-22001000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:22000200-22001000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:22000200-22001000	Enhancers	HSMM	muscle
13	chr7:22000200-22001000	Enhancers	NHEK	skin
14	chr7:22000200-22001000	Enhancers	NHLF	lung
15	chr7:22000200-22001200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:22000200-22002400	Weak transcription	A549	lung
17	chr7:22000400-22003400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:22000600-22001000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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