Variant report

Variant	rs6959907
Chromosome Location	chr7:98822477-98822478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98758613..98761078-chr7:98822183..98824776,3	MCF-7	breast:
2	chr7:98807265..98810785-chr7:98821071..98827725,5	MCF-7	breast:
3	chr7:98821675..98823867-chr7:98825430..98827516,2	MCF-7	breast:
4	chr7:98740465..98744367-chr7:98818560..98823208,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10254890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28493386	1.00[EUR][1000 genomes]
rs28597862	1.00[EUR][1000 genomes]
rs28634129	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98802600-98823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98811000-98827600	Weak transcription	Right Atrium	heart
3	chr7:98821400-98822600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:98821400-98822800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:98821400-98824600	Enhancers	Stomach Mucosa	stomach
6	chr7:98821600-98822600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:98821600-98823600	Enhancers	HMEC	breast
8	chr7:98821800-98822600	Enhancers	HSMMtube	muscle
9	chr7:98821800-98822800	Enhancers	HepG2	liver
10	chr7:98822000-98822600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:98822000-98822600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:98822000-98822600	Enhancers	Duodenum Mucosa	Duodenum
13	chr7:98822000-98822600	Flanking Active TSS	K562	blood
14	chr7:98822000-98823200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr7:98822200-98822600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:98822200-98822600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr7:98822200-98822600	Enhancers	Fetal Intestine Small	intestine
18	chr7:98822200-98822600	Flanking Active TSS	A549	lung
19	chr7:98822200-98822600	Enhancers	HSMM	muscle
20	chr7:98822200-98822600	Flanking Active TSS	NHEK	skin
21	chr7:98822200-98822800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:98822400-98822600	Flanking Active TSS	NH-A	brain
23	chr7:98822400-98822600	Enhancers	Osteobl	bone
24	chr7:98822400-98822800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:98822400-98822800	Flanking Active TSS	Hela-S3	cervix

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